For 2009, Bioch508 course will be substantially reorganized, with
greatly increased emphasis on Expresssion analysis, pathways, and
comparative genomics.
The schedule below is from the last time
Bioch508 was taught, in Spring, 2006.
Tuesday and Thursday 2:00 - 3:30
Biochemistry Library, Jordan Hall, Room 6-6
Course directors:
William R. Pearson, Jordan Hall Rm 6-057, wrp@virginia.edu and
Stefan Bekiranov, Jordan 6-054, sb3de@virginia.edu
Texts:
BIOINFORMATICS: Sequence and Genome Analysis 2nd ed., D. W. Mount (2004) Cold Spring Harbor Press ISBN 0-879-69712-1
BIOINFORMATICS FOR DUMMIES, J.-M. Claverie, C. Notredame (2003) Wiley ISBN 0-764-51696-5
BIOINFORMATICS 2nd ed., A. D. Baxevanis and B. F. Ouellette (2001) Wiley-Interscience ISBN 0-471-38391-0
| R | 1/15 | Introduction to Biological Sequence Analysis Lecture PDF | Not Pearson |
| T | 1/20 | Protein Evolution Lecture PDF | Pearson |
| R | 1/22 | Protein Evolution LAB | Pearson |
| T | 1/27 | Similarity scoring matrices - Profiles/PSSMs Lecture PDF | Pearson |
| R | 1/29 | Multiple sequence alignment | Pearson |
| T | 2/3 | Advance comparison I - PSI-BLAST/HMMs | Pearson |
| R | 2/5 | Exam I 2004 exam | |
| T | 2/10 | Phylogenetics I | Pearson |
| R | 2/12 | Phylogenetics II | Pearson |
| T | 2/17 | PHYLIP | Pearson |
| R | 2/19 | Evaluating Trees Lecture PDF | Pearson |
| T | 2/24 | Phylogeny Projects I | |
| R | 2/26 | Phylogeny Projects II | |
| T | 3/3 | Spring Break | |
| R | 3/5 | Spring Break | |
| T | 3/10 | Microarrays 1 - Resources | Bekiranov |
| R | 3/12 | Microarrays 2 - Analysis | Bekiranov |
| T | 3/17 | Statistical Approaches | Bekiranov |
| R | 3/19 | Bioconductor | Bekiranov |
| T | 3/24 | Visualization 1 | Bekiranov |
| R | 3/26 | Pathways 1 | Bekiranov |
| T | 3/31 | Pathways 2 | Bekiranov |
| R | 4/2 | Exam II | |
| T | 4/7 | Genome DNA | Bekiranov |
| R | 4/9 | Visualization II - Genome Browsers | Bekiranov |
| T | 4/14 | Genomic DNA 2 | Bekiranov |
| R | 4/16 | Genomic DNA 3 | Bekiranov |
| T | 4/21 | Genomic DNA 4 | Bekiranov |
| R | 4/23 | Projects I | |
| T | 4/28 | Projects II | |
| R | 4/30 | Possible add'nl day | |
| T | 5/5 | Possible add'nl day | |
Links to other Computational Biology Courses
Last modified: Thursday, 20-Nov-2008 10:10:29 EST